L-serine
Everything that changed this flow. Back to the flow
024fc774-cd35-44de-9f86-d3fd19c40afc
By field
13 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 6 | enrich_references, link_flows_to_their_substance, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | the substance's answer, copied onto its flow |
| altLabel | 3 | chebi_altlabels, consensus_match, dedupe_altlabels | Deduplicated altLabel values and removed entries matching prefLabel |
| prefLabel | 2 | bootstrap_labels, normalize_name_case | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| cas_match_labels | 1 | consensus_match | group_key=l-serine||dimension=Environmental > media=Ground > geography=Non-agricultural; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'56-45-1': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-7e658debdb663f3c: {'56-45-1': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to non-agricultural soil |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to non-agricultural soil |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['56-45-1']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_17115']; candidate_pubchem_cids=[617, 5951, 71077, 79607, 6857581, 22567336]; selected_pubchem_cids=[5951]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
21| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 1,904 | bootstrap_labels | prefLabel | — | [{"@value":"l-serine","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"conse… | Bootstrapped prefLabel from legacy name field |
| 1,905 | bootstrap_labels | name | l-serine | — | Purged legacy name field to enforce prefLabel usage |
| 1,906 | bootstrap_labels | synonyms | ["organic","l-serine"] | [] | Removed legacy synonyms field in favor of structured labels |
| 27,235 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Ground","geography":"Non-agricultural"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to non-agricultural soil |
| 27,236 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-grou-noag | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to soil > Emissions to non-agricultural soil |
| 213,976 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 221,539 | normalize_name_case | prefLabel | [{"@value":"l-serine","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"conse… | [{"@value":"L-serine","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"conse… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 229,016 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C3H7NO3"],… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 229,017 | enrich_references | skos_definition | — | [{"@value":"The L-enantiomer of serine.","@language":"en","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_… | Merged ChEBI/PubChem definitions into skos:definition |
| 229,018 | enrich_references | references | [] | [{"@id":"drugcentral:4127","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"… | Added references with provenance; cas_numbers=['56-45-1']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_17115']; candidate_pubchem_cids=[617, 5951, 71077, 79607, 6857581, 22567336]; selected_pubchem_cids=[5951]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 248,851 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C3H7NO3"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C3H7NO3"],… | rdkit_pre_consensus from 'C(C(C(=O)O)N)O'; added: inchi2d_string, monoisotopic_mass |
| 254,608 | chebi_altlabels | altLabel | [] | [{"@value":"(2S)-2-amino-3-hydroxypropanoic acid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","p… | Added 17 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 268,299 | consensus_match | altLabel | [{"@value":"(2S)-2-amino-3-hydroxypropanoic acid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","p… | [{"@value":"(2S)-2-amino-3-hydroxypropanoic acid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","p… | group_key=l-serine||dimension=Environmental > media=Ground > geography=Non-agricultural; cas=56-45-1; added Common Chemistry CAS names as altLabel: (-)-Serine, (2S)-2-Azaniumyl-3-hydroxypropanoate, (<em>S</em>)-α-Amino-β-hydroxypropionic acid, 10: PN: WO2021055880 SEQID: 11 claimed protein, 160: PN: WO2022103927 SEQID: 197 claimed protein, 1: PN: WO2025087436 PAGE: 223 sequence, 2: PN: WO2020113403 TABLE: L1 claimed sequence, 2: PN: WO2024080304 PAGE: 283 claimed sequence, 31: PN: WO2022257479 PAGE: 22 claimed sequence, 4: PN: CN120157754 SEQID: 165 protein, 4: PN: WO2020191289 PAGE: 118 claimed sequence, 4: PN: WO2025124489 SEQID: 165 protein, 5: PN: WO2021127752 SEQID: 15 claimed sequence, 78: PN: WO2025117649 SEQID: 87 sequence, <span class="text-smallcaps">L</span>-Alanine, 3-hydroxy-, MeSH ID: D012694, Propanoic acid, 2-amino-3-hydroxy-, (<em>S</em>)-, Serine, <span class="text-smallcaps">L</span>-, β-Hydroxy-<span class="text-smallcaps">L</span>-alanine; object_uuid=fo-7e658debdb663f3c |
| 268,300 | consensus_match | cas_match_labels | — | {"56-45-1":"exactMatch"} | group_key=l-serine||dimension=Environmental > media=Ground > geography=Non-agricultural; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'56-45-1': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-7e658debdb663f3c: {'56-45-1': 'exactMatch'} |
| 273,972 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C3H7NO3"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C3H7NO3"],… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'L-serine' |
| 280,372 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C3H7NO3"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C3H7NO3"],… | rdkit_post_consensus from 'N[C@@H](CO)C(=O)O'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 292,075 | dedupe_altlabels | altLabel | [{"@value":"(2S)-2-amino-3-hydroxypropanoic acid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","p… | [{"@value":"(2S)-2-amino-3-hydroxypropanoic acid","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","p… | Deduplicated altLabel values and removed entries matching prefLabel |
| 294,700 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/024fc774-cd35-… | associations resolved on the elementary layer |
| 388,286 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C3H7NO3"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C3H7NO3"],… | typed the way the ontology types it |
| 394,940 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/NeutralMolecule"] | the substance's answer, copied onto its flow |
| 394,941 | link_flows_to_their_substance | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C3H7NO3"],… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["C3H7NO3"],… | the substance's answer, copied onto its flow |
PROV-O trail
21 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260920T1042228874600000/1904 | prefLabel | ef:agent/bootstrap_labels | ef:flow/024fc774-cd35-44de-9f86-d3fd19c40afc/v0 | ef:flow/024fc774-cd35-44de-9f86-d3fd19c40afc/v1 |
| ef:activity/change/20260920T1042228874600000/1905 | name | ef:agent/bootstrap_labels | ef:flow/024fc774-cd35-44de-9f86-d3fd19c40afc/v1 | ef:flow/024fc774-cd35-44de-9f86-d3fd19c40afc/v2 |
| ef:activity/change/20260920T1042228874600000/1906 | synonyms | ef:agent/bootstrap_labels | ef:flow/024fc774-cd35-44de-9f86-d3fd19c40afc/v2 | ef:flow/024fc774-cd35-44de-9f86-d3fd19c40afc/v3 |
| ef:activity/change/20260920T1042228874600000/27235 | context | ef:agent/default_context_mapping | ef:flow/024fc774-cd35-44de-9f86-d3fd19c40afc/v3 | ef:flow/024fc774-cd35-44de-9f86-d3fd19c40afc/v4 |
| ef:activity/change/20260920T1042228874600000/27236 | context_iri | ef:agent/default_context_mapping | ef:flow/024fc774-cd35-44de-9f86-d3fd19c40afc/v4 | ef:flow/024fc774-cd35-44de-9f86-d3fd19c40afc/v5 |
| ef:activity/change/20260920T1042228874600000/213976 | unit_iri | ef:agent/unit_normalization | ef:flow/024fc774-cd35-44de-9f86-d3fd19c40afc/v5 | ef:flow/024fc774-cd35-44de-9f86-d3fd19c40afc/v6 |
| ef:activity/change/20260920T1042228874600000/221539 | prefLabel | ef:agent/normalize_name_case | ef:flow/024fc774-cd35-44de-9f86-d3fd19c40afc/v6 | ef:flow/024fc774-cd35-44de-9f86-d3fd19c40afc/v7 |
| ef:activity/change/20260920T1042228874600000/229016 | properties | ef:agent/enrich_references | ef:flow/024fc774-cd35-44de-9f86-d3fd19c40afc/v7 | ef:flow/024fc774-cd35-44de-9f86-d3fd19c40afc/v8 |
| ef:activity/change/20260920T1042228874600000/229017 | skos_definition | ef:agent/enrich_references | ef:flow/024fc774-cd35-44de-9f86-d3fd19c40afc/v8 | ef:flow/024fc774-cd35-44de-9f86-d3fd19c40afc/v9 |
| ef:activity/change/20260920T1042228874600000/229018 | references | ef:agent/enrich_references | ef:flow/024fc774-cd35-44de-9f86-d3fd19c40afc/v9 | ef:flow/024fc774-cd35-44de-9f86-d3fd19c40afc/v10 |
| ef:activity/change/20260920T1042228874600000/248851 | properties | ef:agent/rdkit_pre_consensus | ef:flow/024fc774-cd35-44de-9f86-d3fd19c40afc/v10 | ef:flow/024fc774-cd35-44de-9f86-d3fd19c40afc/v11 |
| ef:activity/change/20260920T1042228874600000/254608 | altLabel | ef:agent/chebi_altlabels | ef:flow/024fc774-cd35-44de-9f86-d3fd19c40afc/v11 | ef:flow/024fc774-cd35-44de-9f86-d3fd19c40afc/v12 |
| ef:activity/change/20260920T1042228874600000/268299 | altLabel | ef:agent/consensus_match | ef:flow/024fc774-cd35-44de-9f86-d3fd19c40afc/v12 | ef:flow/024fc774-cd35-44de-9f86-d3fd19c40afc/v13 |
| ef:activity/change/20260920T1042228874600000/268300 | cas_match_labels | ef:agent/consensus_match | ef:flow/024fc774-cd35-44de-9f86-d3fd19c40afc/v13 | ef:flow/024fc774-cd35-44de-9f86-d3fd19c40afc/v14 |
| ef:activity/change/20260920T1042228874600000/273972 | properties | ef:agent/opsin_iupac | ef:flow/024fc774-cd35-44de-9f86-d3fd19c40afc/v14 | ef:flow/024fc774-cd35-44de-9f86-d3fd19c40afc/v15 |
| ef:activity/change/20260920T1042228874600000/280372 | properties | ef:agent/rdkit_post_consensus | ef:flow/024fc774-cd35-44de-9f86-d3fd19c40afc/v15 | ef:flow/024fc774-cd35-44de-9f86-d3fd19c40afc/v16 |
| ef:activity/change/20260920T1042228874600000/292075 | altLabel | ef:agent/dedupe_altlabels | ef:flow/024fc774-cd35-44de-9f86-d3fd19c40afc/v16 | ef:flow/024fc774-cd35-44de-9f86-d3fd19c40afc/v17 |
| ef:activity/change/20260920T1042228874600000/294700 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/024fc774-cd35-44de-9f86-d3fd19c40afc/v17 | ef:flow/024fc774-cd35-44de-9f86-d3fd19c40afc/v18 |
| ef:activity/change/20260920T1042228874600000/388286 | properties | ef:agent/normalise_property_values | ef:flow/024fc774-cd35-44de-9f86-d3fd19c40afc/v18 | ef:flow/024fc774-cd35-44de-9f86-d3fd19c40afc/v19 |
| ef:activity/change/20260920T1042228874600000/394940 | types | ef:agent/link_flows_to_their_substance | ef:flow/024fc774-cd35-44de-9f86-d3fd19c40afc/v19 | ef:flow/024fc774-cd35-44de-9f86-d3fd19c40afc/v20 |
| ef:activity/change/20260920T1042228874600000/394941 | properties | ef:agent/link_flows_to_their_substance | ef:flow/024fc774-cd35-44de-9f86-d3fd19c40afc/v20 | ef:flow/024fc774-cd35-44de-9f86-d3fd19c40afc/v21 |