Sodium(1+)
Everything that changed this flow. Back to the flow
99c541c4-8876-4b9b-b8bc-040ac301b34c
By field
12 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 6 | enrich_references, link_flows_to_their_substance, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | the substance's answer, copied onto its flow |
| altLabel | 3 | chebi_altlabels, consensus_match, dedupe_altlabels | Deduplicated altLabel values and removed entries matching prefLabel |
| prefLabel | 3 | bootstrap_labels, normalize_name_case, substance_label_v1 | the substance's name: Sodium(1+) |
| cas_match_labels | 1 | consensus_match | group_key=sodium,ion||dimension=Environmental > media=Water > water_body=Unknown; group_sources=['chebi']; cas_sources={'17341-25-2': ['chebi']}; assigned CAS labels from group consensus; object_uuid=fo-6e3a6a9b38748e32: {'17341-25-2': 'exactMatch'} |
| concept_associations | 1 | carry_associations_onto_flows | associations resolved on the elementary layer |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to sea water |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to sea water |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['17341-25-2']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_29101']; candidate_pubchem_cids=[923, 96816]; selected_pubchem_cids=[923]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
21| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 20,454 | bootstrap_labels | prefLabel | — | [{"@value":"Sodium, ion","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"co… | Bootstrapped prefLabel from legacy name field |
| 20,455 | bootstrap_labels | name | Sodium, ion | — | Purged legacy name field to enforce prefLabel usage |
| 141,147 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Water","water_body":"Ocean"} | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to sea water |
| 141,148 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-wate-ocea | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to water > Emissions to sea water |
| 219,964 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 225,732 | normalize_name_case | prefLabel | [{"@value":"Sodium, ion","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"co… | [{"@value":"Sodium, Ion","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"co… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 246,077 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Na","Na+"]… | Added ChEBI/PubChem properties (chebi_ids=1, pubchem_cids=1) |
| 246,078 | enrich_references | skos_definition | — | [{"@value":"A monoatomic monocation obtained from sodium.","@language":"en","provenance":{"prov:wasGeneratedBy":"enrich… | Merged ChEBI/PubChem definitions into skos:definition |
| 246,079 | enrich_references | references | [] | [{"@id":"gmelin:15196","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"cons… | Added references with provenance; cas_numbers=['17341-25-2']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_29101']; candidate_pubchem_cids=[923, 96816]; selected_pubchem_cids=[923]; formula_similarity_expected=[]; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 253,773 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Na","Na+"]… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Na","Na+"]… | rdkit_pre_consensus from '[Na+]'; added: monoisotopic_mass |
| 257,014 | chebi_altlabels | altLabel | [] | [{"@value":"Na(+)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus… | Added 7 ChEBI synonym(s) as altLabel from 1 linked ChEBI record(s) |
| 272,053 | consensus_match | altLabel | [{"@value":"Na(+)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus… | [{"@value":"Na(+)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus… | group_key=sodium,ion||dimension=Environmental > media=Water > water_body=Unknown; cas=17341-25-2; added Common Chemistry CAS names as altLabel: Na<sup>1+</sup>, Sodium (Na<sup>1+</sup>), Sodium cation(1+), Sodium ion(1+), Sodium, ion (Na<sup>1+</sup>), Sodium-23(1+); object_uuid=fo-6e3a6a9b38748e32 |
| 272,054 | consensus_match | cas_match_labels | — | {"17341-25-2":"exactMatch"} | group_key=sodium,ion||dimension=Environmental > media=Water > water_body=Unknown; group_sources=['chebi']; cas_sources={'17341-25-2': ['chebi']}; assigned CAS labels from group consensus; object_uuid=fo-6e3a6a9b38748e32: {'17341-25-2': 'exactMatch'} |
| 278,977 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Na","Na+"]… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Na","Na+"]… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'sodium(1+)' |
| 285,796 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Na","Na+"]… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Na","Na+"]… | rdkit_post_consensus from '[Na+]'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 293,096 | dedupe_altlabels | altLabel | [{"@value":"Na(+)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus… | [{"@value":"Na(+)","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus… | Deduplicated altLabel values and removed entries matching prefLabel |
| 351,609 | carry_associations_onto_flows | concept_associations | [] | [{"@type":"xkos:ConceptAssociation","xkos:sourceConcept":{"@id":"https://vocab.brightway.one/ef/3.1/flow/99c541c4-8876-… | associations resolved on the elementary layer |
| 393,382 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Na","Na+"]… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Na","Na+"]… | typed the way the ontology types it |
| 402,298 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/AtomCation"] | the substance's answer, copied onto its flow |
| 402,299 | link_flows_to_their_substance | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Na","Na+"]… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Na","Na+"]… | the substance's answer, copied onto its flow |
| 404,013 | substance_label_v1 | prefLabel | [{"@value":"Sodium, Ion","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"co… | [{"@value":"Sodium(1+)","@language":"en","@lang":"en","source":{"prov:wasGeneratedBy":"substance_label_v1","prov:wasAtt… | the substance's name: Sodium(1+) |
PROV-O trail
21 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260920T1042228874600000/20454 | prefLabel | ef:agent/bootstrap_labels | ef:flow/99c541c4-8876-4b9b-b8bc-040ac301b34c/v0 | ef:flow/99c541c4-8876-4b9b-b8bc-040ac301b34c/v1 |
| ef:activity/change/20260920T1042228874600000/20455 | name | ef:agent/bootstrap_labels | ef:flow/99c541c4-8876-4b9b-b8bc-040ac301b34c/v1 | ef:flow/99c541c4-8876-4b9b-b8bc-040ac301b34c/v2 |
| ef:activity/change/20260920T1042228874600000/141147 | context | ef:agent/default_context_mapping | ef:flow/99c541c4-8876-4b9b-b8bc-040ac301b34c/v2 | ef:flow/99c541c4-8876-4b9b-b8bc-040ac301b34c/v3 |
| ef:activity/change/20260920T1042228874600000/141148 | context_iri | ef:agent/default_context_mapping | ef:flow/99c541c4-8876-4b9b-b8bc-040ac301b34c/v3 | ef:flow/99c541c4-8876-4b9b-b8bc-040ac301b34c/v4 |
| ef:activity/change/20260920T1042228874600000/219964 | unit_iri | ef:agent/unit_normalization | ef:flow/99c541c4-8876-4b9b-b8bc-040ac301b34c/v4 | ef:flow/99c541c4-8876-4b9b-b8bc-040ac301b34c/v5 |
| ef:activity/change/20260920T1042228874600000/225732 | prefLabel | ef:agent/normalize_name_case | ef:flow/99c541c4-8876-4b9b-b8bc-040ac301b34c/v5 | ef:flow/99c541c4-8876-4b9b-b8bc-040ac301b34c/v6 |
| ef:activity/change/20260920T1042228874600000/246077 | properties | ef:agent/enrich_references | ef:flow/99c541c4-8876-4b9b-b8bc-040ac301b34c/v6 | ef:flow/99c541c4-8876-4b9b-b8bc-040ac301b34c/v7 |
| ef:activity/change/20260920T1042228874600000/246078 | skos_definition | ef:agent/enrich_references | ef:flow/99c541c4-8876-4b9b-b8bc-040ac301b34c/v7 | ef:flow/99c541c4-8876-4b9b-b8bc-040ac301b34c/v8 |
| ef:activity/change/20260920T1042228874600000/246079 | references | ef:agent/enrich_references | ef:flow/99c541c4-8876-4b9b-b8bc-040ac301b34c/v8 | ef:flow/99c541c4-8876-4b9b-b8bc-040ac301b34c/v9 |
| ef:activity/change/20260920T1042228874600000/253773 | properties | ef:agent/rdkit_pre_consensus | ef:flow/99c541c4-8876-4b9b-b8bc-040ac301b34c/v9 | ef:flow/99c541c4-8876-4b9b-b8bc-040ac301b34c/v10 |
| ef:activity/change/20260920T1042228874600000/257014 | altLabel | ef:agent/chebi_altlabels | ef:flow/99c541c4-8876-4b9b-b8bc-040ac301b34c/v10 | ef:flow/99c541c4-8876-4b9b-b8bc-040ac301b34c/v11 |
| ef:activity/change/20260920T1042228874600000/272053 | altLabel | ef:agent/consensus_match | ef:flow/99c541c4-8876-4b9b-b8bc-040ac301b34c/v11 | ef:flow/99c541c4-8876-4b9b-b8bc-040ac301b34c/v12 |
| ef:activity/change/20260920T1042228874600000/272054 | cas_match_labels | ef:agent/consensus_match | ef:flow/99c541c4-8876-4b9b-b8bc-040ac301b34c/v12 | ef:flow/99c541c4-8876-4b9b-b8bc-040ac301b34c/v13 |
| ef:activity/change/20260920T1042228874600000/278977 | properties | ef:agent/opsin_iupac | ef:flow/99c541c4-8876-4b9b-b8bc-040ac301b34c/v13 | ef:flow/99c541c4-8876-4b9b-b8bc-040ac301b34c/v14 |
| ef:activity/change/20260920T1042228874600000/285796 | properties | ef:agent/rdkit_post_consensus | ef:flow/99c541c4-8876-4b9b-b8bc-040ac301b34c/v14 | ef:flow/99c541c4-8876-4b9b-b8bc-040ac301b34c/v15 |
| ef:activity/change/20260920T1042228874600000/293096 | altLabel | ef:agent/dedupe_altlabels | ef:flow/99c541c4-8876-4b9b-b8bc-040ac301b34c/v15 | ef:flow/99c541c4-8876-4b9b-b8bc-040ac301b34c/v16 |
| ef:activity/change/20260920T1042228874600000/351609 | concept_associations | ef:agent/carry_associations_onto_flows | ef:flow/99c541c4-8876-4b9b-b8bc-040ac301b34c/v16 | ef:flow/99c541c4-8876-4b9b-b8bc-040ac301b34c/v17 |
| ef:activity/change/20260920T1042228874600000/393382 | properties | ef:agent/normalise_property_values | ef:flow/99c541c4-8876-4b9b-b8bc-040ac301b34c/v17 | ef:flow/99c541c4-8876-4b9b-b8bc-040ac301b34c/v18 |
| ef:activity/change/20260920T1042228874600000/402298 | types | ef:agent/link_flows_to_their_substance | ef:flow/99c541c4-8876-4b9b-b8bc-040ac301b34c/v18 | ef:flow/99c541c4-8876-4b9b-b8bc-040ac301b34c/v19 |
| ef:activity/change/20260920T1042228874600000/402299 | properties | ef:agent/link_flows_to_their_substance | ef:flow/99c541c4-8876-4b9b-b8bc-040ac301b34c/v19 | ef:flow/99c541c4-8876-4b9b-b8bc-040ac301b34c/v20 |
| ef:activity/change/20260920T1042228874600000/404013 | prefLabel | ef:agent/substance_label_v1 | ef:flow/99c541c4-8876-4b9b-b8bc-040ac301b34c/v20 | ef:flow/99c541c4-8876-4b9b-b8bc-040ac301b34c/v21 |