Beryllium
Everything that changed this flow. Back to the flow
cd6262a9-9397-4456-beb4-86a736449186
By field
16 fields| Field | Changes | Written by | Latest note |
|---|---|---|---|
| properties | 6 | enrich_references, link_flows_to_their_substance, normalise_property_values, opsin_iupac, rdkit_post_consensus, rdkit_pre_consensus | the substance's answer, copied onto its flow |
| prefLabel | 3 | bootstrap_labels, flow_layers.pubchem_element_enrichment, normalize_name_case | element name from the flow object: Beryllium |
| altLabel | 2 | chebi_altlabels, consensus_match | group_key=beryllium||dimension=Environmental > media=Air > strata=Aircraft cruise height; cas=7440-41-7; added Common Chemistry CAS names as altLabel: Beryllium atom, Beryllium element, Beryllium poisoning, Beryllium-9, Glucinium, MeSH ID: D001608; object_uuid=fo-48c318d9e89b48fb |
| cas_match_labels | 1 | consensus_match | group_key=beryllium||dimension=Environmental > media=Air > strata=Aircraft cruise height; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'7440-41-7': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-48c318d9e89b48fb: {'7440-41-7': 'exactMatch'} |
| context | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to non-urban air high stack |
| context_iri | 1 | default_context_mapping | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to non-urban air high stack |
| dcterms_is_replaced_by | 1 | pipeline.collision_decisions | merged onto 4d9a8790-3ddd-11dd-9d8e-0050c2490048 by curator ruling: Rural air, medium stack under 150 metres. Beryllium, 7440-41-7, six factors each side. The least ambiguous pair in #530: two rows with the same name, the same registry number, the same EC number and the same characterisation, in one compartment. Nothing distinguishes them at all except that one carries EF's sentence `CAS number of the metallic form is chosen. Note that this elementary flow is representing also all ions...` and the other carries no comment. A general comment is not a substance. The row with the comment survives because it is also the row ecoinvent 3.8 and 3.12 map onto; the factor counts tie, so a sort would decide it on the identifier and would not be deciding anything (#530). |
| ec_numbers | 1 | ec_cross_check | Resolved from EC-inventory: 231-150-7 from CAS 7440-41-7 |
| is_replaced_by_uuid | 1 | pipeline.collision_decisions | merged onto 4d9a8790-3ddd-11dd-9d8e-0050c2490048 by curator ruling: Rural air, medium stack under 150 metres. Beryllium, 7440-41-7, six factors each side. The least ambiguous pair in #530: two rows with the same name, the same registry number, the same EC number and the same characterisation, in one compartment. Nothing distinguishes them at all except that one carries EF's sentence `CAS number of the metallic form is chosen. Note that this elementary flow is representing also all ions...` and the other carries no comment. A general comment is not a substance. The row with the comment survives because it is also the row ecoinvent 3.8 and 3.12 map onto; the factor counts tie, so a sort would decide it on the identifier and would not be deciding anything (#530). |
| name | 1 | bootstrap_labels | Purged legacy name field to enforce prefLabel usage |
| owl_deprecated | 1 | pipeline.collision_decisions | merged onto 4d9a8790-3ddd-11dd-9d8e-0050c2490048 by curator ruling: Rural air, medium stack under 150 metres. Beryllium, 7440-41-7, six factors each side. The least ambiguous pair in #530: two rows with the same name, the same registry number, the same EC number and the same characterisation, in one compartment. Nothing distinguishes them at all except that one carries EF's sentence `CAS number of the metallic form is chosen. Note that this elementary flow is representing also all ions...` and the other carries no comment. A general comment is not a substance. The row with the comment survives because it is also the row ecoinvent 3.8 and 3.12 map onto; the factor counts tie, so a sort would decide it on the identifier and would not be deciding anything (#530). |
| references | 1 | enrich_references | Added references with provenance; cas_numbers=['7440-41-7']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_30501', 'http://purl.obolibrary.org/obo/CHEBI_33783']; candidate_pubchem_cids=[139073, 5460467, 101221390]; selected_pubchem_cids=[5460467]; formula_similarity_expected=['Be']; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| skos_definition | 1 | enrich_references | Merged ChEBI/PubChem definitions into skos:definition |
| synonyms | 1 | bootstrap_labels | Removed legacy synonyms field in favor of structured labels |
| types | 1 | link_flows_to_their_substance | the substance's answer, copied onto its flow |
| unit_iri | 1 | unit_normalization | Unit IRI set from normalization of 'kg' |
Where several steps wrote one field, the last one won — and the log below shows the sequence.
Changes
24| # | Step | Field | From | To | Why |
|---|---|---|---|---|---|
| 19,600 | bootstrap_labels | prefLabel | — | [{"@value":"beryllium","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"cons… | Bootstrapped prefLabel from legacy name field |
| 19,601 | bootstrap_labels | name | beryllium | — | Purged legacy name field to enforce prefLabel usage |
| 19,602 | bootstrap_labels | synonyms | ["AC1NUT9F","BERYLLIUM, ULTRA HIGH PURITY","Be","Be(0)","Beryllium [Beryllium and certain beryllium compounds]","Beryll… | [] | Removed legacy synonyms field in favor of structured labels |
| 171,433 | default_context_mapping | context | — | {"dimension":"Environmental","media":"Air","strata":"Medium stack, <150 meters","population_density":"Rural (<1000 peop… | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to non-urban air high stack |
| 171,434 | default_context_mapping | context_iri | — | https://vocab.brightway.one/flow-contexts/envi-air-mest15me-ru10pesq | Mapped from context mapping for source=EF 3.1, source context Emissions > Emissions to air > Emissions to non-urban air high stack |
| 219,716 | unit_normalization | unit_iri | — | https://vocab.brightway.one/units/unit/KiloGM | Unit IRI set from normalization of 'kg' |
| 225,544 | normalize_name_case | prefLabel | [{"@value":"beryllium","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"cons… | [{"@value":"Beryllium","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"cons… | Title-cased words without internal capitals (preserved words with uppercase letters beyond the first character) |
| 227,038 | ec_cross_check | ec_numbers | [] | ["231-150-7"] | Resolved from EC-inventory: 231-150-7 from CAS 7440-41-7 |
| 245,385 | enrich_references | properties | {} | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Be"],"atte… | Added ChEBI/PubChem properties (chebi_ids=2, pubchem_cids=1) |
| 245,386 | enrich_references | skos_definition | — | [{"@value":"Alkaline earth metal atom with atomic number 4.","@language":"en","provenance":{"prov:wasGeneratedBy":"enri… | Merged ChEBI/PubChem definitions into skos:definition |
| 245,387 | enrich_references | references | [] | [{"@id":"gmelin:16265","provenance":{"prov:wasGeneratedBy":"enrich_references.chebi_xrefs","prov:wasAttributedTo":"cons… | Added references with provenance; cas_numbers=['7440-41-7']; matched_chebi_ids=['http://purl.obolibrary.org/obo/CHEBI_30501', 'http://purl.obolibrary.org/obo/CHEBI_33783']; candidate_pubchem_cids=[139073, 5460467, 101221390]; selected_pubchem_cids=[5460467]; formula_similarity_expected=['Be']; pubchem_selection_rule=curated_cas_then_formula_similarity_then_prefer_chebi_aligned_when_unambiguous_else_keep_all_cas_matches; single_cas_commonchem_link=yes |
| 253,572 | rdkit_pre_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Be"],"atte… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Be"],"atte… | rdkit_pre_consensus from '[Be]'; added: monoisotopic_mass |
| 256,930 | chebi_altlabels | altLabel | [] | [{"@value":"4Be","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-f… | Added 7 ChEBI synonym(s) as altLabel from 2 linked ChEBI record(s) |
| 264,229 | consensus_match | altLabel | [{"@value":"4Be","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-f… | [{"@value":"4Be","@language":"en","source":{"prov:wasGeneratedBy":"chebi_altlabels","prov:wasAttributedTo":"consensus-f… | group_key=beryllium||dimension=Environmental > media=Air > strata=Aircraft cruise height; cas=7440-41-7; added Common Chemistry CAS names as altLabel: Beryllium atom, Beryllium element, Beryllium poisoning, Beryllium-9, Glucinium, MeSH ID: D001608; object_uuid=fo-48c318d9e89b48fb |
| 264,230 | consensus_match | cas_match_labels | — | {"7440-41-7":"exactMatch"} | group_key=beryllium||dimension=Environmental > media=Air > strata=Aircraft cruise height; group_sources=['chebi', 'ec_inventory', 'pubchem']; cas_sources={'7440-41-7': ['chebi', 'ec_inventory', 'pubchem']}; assigned CAS labels from group consensus; object_uuid=fo-48c318d9e89b48fb: {'7440-41-7': 'exactMatch'} |
| 278,790 | opsin_iupac | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Be"],"atte… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Be"],"atte… | opsin_iupac: set authoritative IUPAC name, SMILES, InChI from 'Beryllium' |
| 285,574 | rdkit_post_consensus | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Be"],"atte… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Be"],"atte… | rdkit_post_consensus from '[Be]'; confirmed: smiles_string, inchi2d_string, inchi2d_key_string, molecular_formula, molecular_mass, monoisotopic_mass |
| 293,349 | pipeline.collision_decisions | owl_deprecated | — | yes | merged onto 4d9a8790-3ddd-11dd-9d8e-0050c2490048 by curator ruling: Rural air, medium stack under 150 metres. Beryllium, 7440-41-7, six factors each side. The least ambiguous pair in #530: two rows with the same name, the same registry number, the same EC number and the same characterisation, in one compartment. Nothing distinguishes them at all except that one carries EF's sentence `CAS number of the metallic form is chosen. Note that this elementary flow is representing also all ions...` and the other carries no comment. A general comment is not a substance. The row with the comment survives because it is also the row ecoinvent 3.8 and 3.12 map onto; the factor counts tie, so a sort would decide it on the identifier and would not be deciding anything (#530). |
| 293,350 | pipeline.collision_decisions | dcterms_is_replaced_by | — | urn:uuid:4d9a8790-3ddd-11dd-9d8e-0050c2490048 | merged onto 4d9a8790-3ddd-11dd-9d8e-0050c2490048 by curator ruling: Rural air, medium stack under 150 metres. Beryllium, 7440-41-7, six factors each side. The least ambiguous pair in #530: two rows with the same name, the same registry number, the same EC number and the same characterisation, in one compartment. Nothing distinguishes them at all except that one carries EF's sentence `CAS number of the metallic form is chosen. Note that this elementary flow is representing also all ions...` and the other carries no comment. A general comment is not a substance. The row with the comment survives because it is also the row ecoinvent 3.8 and 3.12 map onto; the factor counts tie, so a sort would decide it on the identifier and would not be deciding anything (#530). |
| 293,351 | pipeline.collision_decisions | is_replaced_by_uuid | — | 4d9a8790-3ddd-11dd-9d8e-0050c2490048 | merged onto 4d9a8790-3ddd-11dd-9d8e-0050c2490048 by curator ruling: Rural air, medium stack under 150 metres. Beryllium, 7440-41-7, six factors each side. The least ambiguous pair in #530: two rows with the same name, the same registry number, the same EC number and the same characterisation, in one compartment. Nothing distinguishes them at all except that one carries EF's sentence `CAS number of the metallic form is chosen. Note that this elementary flow is representing also all ions...` and the other carries no comment. A general comment is not a substance. The row with the comment survives because it is also the row ecoinvent 3.8 and 3.12 map onto; the factor counts tie, so a sort would decide it on the identifier and would not be deciding anything (#530). |
| 393,177 | normalise_property_values | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Be"],"atte… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Be"],"atte… | typed the way the ontology types it |
| 401,988 | link_flows_to_their_substance | types | — | ["https://w3id.org/chemrof/ChemicalElement"] | the substance's answer, copied onto its flow |
| 401,989 | link_flows_to_their_substance | properties | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Be"],"atte… | {"https://w3id.org/chemrof/molecular_formula":{"@id":"https://w3id.org/chemrof/molecular_formula","@value":["Be"],"atte… | the substance's answer, copied onto its flow |
| 403,855 | flow_layers.pubchem_element_enrichment | prefLabel | [{"@value":"Beryllium","@language":"en","source":{"prov:wasGeneratedBy":"bootstrap_labels","prov:wasAttributedTo":"cons… | [{"@value":"Beryllium","@language":"en","@lang":"en","source":{"prov:wasGeneratedBy":"flow_layers.pubchem_element_enric… | element name from the flow object: Beryllium |
PROV-O trail
24 activitiesOne activity per change: which version of the flow it consumed, and which it produced. The values are on the change with the same number — stored once, not twice.
| Activity | Field | Agent | Used | Generated |
|---|---|---|---|---|
| ef:activity/change/20260920T1042228874600000/19600 | prefLabel | ef:agent/bootstrap_labels | ef:flow/cd6262a9-9397-4456-beb4-86a736449186/v0 | ef:flow/cd6262a9-9397-4456-beb4-86a736449186/v1 |
| ef:activity/change/20260920T1042228874600000/19601 | name | ef:agent/bootstrap_labels | ef:flow/cd6262a9-9397-4456-beb4-86a736449186/v1 | ef:flow/cd6262a9-9397-4456-beb4-86a736449186/v2 |
| ef:activity/change/20260920T1042228874600000/19602 | synonyms | ef:agent/bootstrap_labels | ef:flow/cd6262a9-9397-4456-beb4-86a736449186/v2 | ef:flow/cd6262a9-9397-4456-beb4-86a736449186/v3 |
| ef:activity/change/20260920T1042228874600000/171433 | context | ef:agent/default_context_mapping | ef:flow/cd6262a9-9397-4456-beb4-86a736449186/v3 | ef:flow/cd6262a9-9397-4456-beb4-86a736449186/v4 |
| ef:activity/change/20260920T1042228874600000/171434 | context_iri | ef:agent/default_context_mapping | ef:flow/cd6262a9-9397-4456-beb4-86a736449186/v4 | ef:flow/cd6262a9-9397-4456-beb4-86a736449186/v5 |
| ef:activity/change/20260920T1042228874600000/219716 | unit_iri | ef:agent/unit_normalization | ef:flow/cd6262a9-9397-4456-beb4-86a736449186/v5 | ef:flow/cd6262a9-9397-4456-beb4-86a736449186/v6 |
| ef:activity/change/20260920T1042228874600000/225544 | prefLabel | ef:agent/normalize_name_case | ef:flow/cd6262a9-9397-4456-beb4-86a736449186/v6 | ef:flow/cd6262a9-9397-4456-beb4-86a736449186/v7 |
| ef:activity/change/20260920T1042228874600000/227038 | ec_numbers | ef:agent/ec_cross_check | ef:flow/cd6262a9-9397-4456-beb4-86a736449186/v7 | ef:flow/cd6262a9-9397-4456-beb4-86a736449186/v8 |
| ef:activity/change/20260920T1042228874600000/245385 | properties | ef:agent/enrich_references | ef:flow/cd6262a9-9397-4456-beb4-86a736449186/v8 | ef:flow/cd6262a9-9397-4456-beb4-86a736449186/v9 |
| ef:activity/change/20260920T1042228874600000/245386 | skos_definition | ef:agent/enrich_references | ef:flow/cd6262a9-9397-4456-beb4-86a736449186/v9 | ef:flow/cd6262a9-9397-4456-beb4-86a736449186/v10 |
| ef:activity/change/20260920T1042228874600000/245387 | references | ef:agent/enrich_references | ef:flow/cd6262a9-9397-4456-beb4-86a736449186/v10 | ef:flow/cd6262a9-9397-4456-beb4-86a736449186/v11 |
| ef:activity/change/20260920T1042228874600000/253572 | properties | ef:agent/rdkit_pre_consensus | ef:flow/cd6262a9-9397-4456-beb4-86a736449186/v11 | ef:flow/cd6262a9-9397-4456-beb4-86a736449186/v12 |
| ef:activity/change/20260920T1042228874600000/256930 | altLabel | ef:agent/chebi_altlabels | ef:flow/cd6262a9-9397-4456-beb4-86a736449186/v12 | ef:flow/cd6262a9-9397-4456-beb4-86a736449186/v13 |
| ef:activity/change/20260920T1042228874600000/264229 | altLabel | ef:agent/consensus_match | ef:flow/cd6262a9-9397-4456-beb4-86a736449186/v13 | ef:flow/cd6262a9-9397-4456-beb4-86a736449186/v14 |
| ef:activity/change/20260920T1042228874600000/264230 | cas_match_labels | ef:agent/consensus_match | ef:flow/cd6262a9-9397-4456-beb4-86a736449186/v14 | ef:flow/cd6262a9-9397-4456-beb4-86a736449186/v15 |
| ef:activity/change/20260920T1042228874600000/278790 | properties | ef:agent/opsin_iupac | ef:flow/cd6262a9-9397-4456-beb4-86a736449186/v15 | ef:flow/cd6262a9-9397-4456-beb4-86a736449186/v16 |
| ef:activity/change/20260920T1042228874600000/285574 | properties | ef:agent/rdkit_post_consensus | ef:flow/cd6262a9-9397-4456-beb4-86a736449186/v16 | ef:flow/cd6262a9-9397-4456-beb4-86a736449186/v17 |
| ef:activity/change/20260920T1042228874600000/293349 | owl_deprecated | ef:agent/pipeline.collision_decisions | ef:flow/cd6262a9-9397-4456-beb4-86a736449186/v17 | ef:flow/cd6262a9-9397-4456-beb4-86a736449186/v18 |
| ef:activity/change/20260920T1042228874600000/293350 | dcterms_is_replaced_by | ef:agent/pipeline.collision_decisions | ef:flow/cd6262a9-9397-4456-beb4-86a736449186/v18 | ef:flow/cd6262a9-9397-4456-beb4-86a736449186/v19 |
| ef:activity/change/20260920T1042228874600000/293351 | is_replaced_by_uuid | ef:agent/pipeline.collision_decisions | ef:flow/cd6262a9-9397-4456-beb4-86a736449186/v19 | ef:flow/cd6262a9-9397-4456-beb4-86a736449186/v20 |
| ef:activity/change/20260920T1042228874600000/393177 | properties | ef:agent/normalise_property_values | ef:flow/cd6262a9-9397-4456-beb4-86a736449186/v20 | ef:flow/cd6262a9-9397-4456-beb4-86a736449186/v21 |
| ef:activity/change/20260920T1042228874600000/401988 | types | ef:agent/link_flows_to_their_substance | ef:flow/cd6262a9-9397-4456-beb4-86a736449186/v21 | ef:flow/cd6262a9-9397-4456-beb4-86a736449186/v22 |
| ef:activity/change/20260920T1042228874600000/401989 | properties | ef:agent/link_flows_to_their_substance | ef:flow/cd6262a9-9397-4456-beb4-86a736449186/v22 | ef:flow/cd6262a9-9397-4456-beb4-86a736449186/v23 |
| ef:activity/change/20260920T1042228874600000/403855 | prefLabel | ef:agent/flow_layers.pubchem_element_enrichment | ef:flow/cd6262a9-9397-4456-beb4-86a736449186/v23 | ef:flow/cd6262a9-9397-4456-beb4-86a736449186/v24 |